Description:
djangogalaxy 0.0.2
Django interfacing with Galaxy. Backend using the bioblend API.
Galaxy is a web based workflow platform that can be used to perform bioinformatics in a reproducible and sharable environment.
Further documentation available on ReadTheDocs
Quick start
Add “galaxy” and django application dependencies to your INSTALLED_APPS setting like this (galaxy should come before gfiles):
INSTALLED_APPS = [
...
'galaxy',
'gfiles',
'django_tables2',
'bootstrap3',
'django_tables2_column_shifter',
'django_sb_admin',
'django_filter'
]
Include the polls URLconf in your project urls.py like this:
url(r'^', include('gfiles.urls')),
url('galaxy/', include('galaxy.urls')),
Run python manage.py migrate to create the models.
Start the development server and visit http://127.0.0.1:8000
Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
View summary of Galaxy instances and options http://127.0.0.1:8000/galaxy/galaxy_summary/
Register Galaxy instance http://127.0.0.1:8000/galaxy/addgi/
Register Galaxy user http://127.0.0.1:8000/galaxy/addguser/
Upload file(s) to Django (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/upload_gfile/
Upload file(s) to Galaxy data library (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/files_to_galaxy_datalib/
Run workflow (for running workflows with ISA data see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/workflow_summary/
View histories http://127.0.0.1:8000/galaxy/history_status/
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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