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Description:
abfexplorer 0.6
ABF Explorer
ABF_Explorer is a simple graphical application for quickly viewing axon binary format (ABF) files from electrophysiology experiments without writing a bunch of boilerplate python/matlab/etc. This graphical tool allows you to quickly scroll through files, read the basic metadata, and take a look at the data.
We use the excellent pyABF package (https://github.com/swharden/pyABF) by Scott W Harden to do the hard work of parsing ABF files.
Use
This is a graphical application for inspecting physiology data in ABF files. ABF Explorer supports Python > 3.7.
Install
pip install abf_explorer
Launch GUI
abf_explorer
Command line options
-d or --startup-dir specify path to a directory containing ABF files.
Use:
abf_explorer -d path/to/abfs
Keyboard shorcuts
TAB will plot the current selection
c will clear the current plot
Sample data
Sample data (abf's) can be downloaded from this repository.
Changelog
abf_explorer==0.6
Date: 2021-04-21
Reason: Bump PyQt5 version to fix BigSur GUI failure.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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