Description:
amid 0.13.0
Awesome Medical Imaging Datasets (AMID) - a curated list of medical imaging datasets with unified interfaces
Getting started
Just import a dataset and start using it!
Note that for some datasets you must manually download the raw files first.
from amid.verse import VerSe
ds = VerSe()
# get the available ids
print(len(ds.ids))
i = ds.ids[0]
# use the available methods:
# load the image and vertebrae masks
x, y = ds.image(i), ds.masks(i)
print(ds.split(i), ds.patient(i))
# or get a namedTuple-like object:
entry = ds(i)
x, y = entry.image, entry.masks
print(entry.split, entry.patient)
Available datasets
Name
Entries
Body region
Modality
AMOS
2465
Abdomen
CT, MRI
BIMCVCovid19
16335
Chest
CT
BraTS2021
5880
Head
MRI T1, MRI T1Gd, MRI T2, MRI T2-FLAIR
CC359
359
Head
MRI T1
CLDetection2023
400
Head
X-ray
CRLM
197
Abdomen
CT, SEG
CT_ICH
75
Head
CT
CrossMoDA
484
Head
MRI T1c, MRI T2hr
DeepLesion
20094
Abdomen, Thorax
CT
EGD
3096
Head
FLAIR, MRI T1, MRI T1GD, MRI T2
FLARE2022
2100
Abdomen
CT
HCP
1113
Head
MRI
KiTS23
489
thorax
CT
LIDC
1018
Chest
CT
LiTS
201
Abdominal
CT
LiverMedseg
50
Chest, Abdomen
CT
MIDRC
155
Thorax
CT
MOOD
1358
Head, Abdominal
MRI, CT
MSD
2628
Chest, Abdominal, Head
CT, CE CT, MRI, MRI FLAIR, MRI T1w, MRI t1gd, MRI T2w, MRI T2, MRI ADC
MSLUB
70
Head
MRI
Medseg9
9
Chest
CT
MoscowCancer500
979
Thorax
CT
MoscowCovid1110
1110
Thorax
CT
NLST
4931
Thorax
CT
NSCLC
422
Thorax
CT
RSNABreastCancer
54710
Thorax
MG
RibFrac
660
Chest
CT
StanfordCoCa
971
Coronary, Chest
CT
TBAD
100
Chest
CT
Totalsegmentator
1204
Head, Thorax, Abdomen, Pelvis, Legs
CT
UPENN_GBM
671
Head
FLAIR, MRI T1, MRI T1GD, MRI T2, DSC MRI, DTI MRI
VSSEG
484
Head
MRI T1c, MRI T2
VerSe
374
Thorax, Abdomen
CT
Check out our docs for a more detailed list of available datasets and their fields.
Install
Just get it from PyPi:
pip install amid
Or if you want to use version control features:
git clone https://github.com/neuro-ml/amid.git
cd amid && pip install -e .
Contribute
Check our contribution guide if you want to add a new dataset to
AMID.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
Customer Reviews
There are no reviews.
