apiarist 0.2.3

Description:

apiarist 0.2.3

Apiarist
A python 2.6+ package for defining Hive queries which can be run on AWS EMR.
It is, in its current form, only addressing a very narrow use-case.
Reading large text files into a Hive database, running a Hive query, and outputting the results to a text file.
File format can be CSV or similar - other delimiters can be specified.
The jobs are runnable locally, which is mainly for testing. You will need a local version of Hive which is in your PATH such that the command hive -f /some/hive/script.hql causes hive to execute the contents of the file.
It is heavily modeled on mrjob and attempts to present a similar API and use similar common variables to cooperate with boto.
A simple Hive job
You will need to provide four methods:

table the name of the table that your query will select from.
input_columns the columns in the source data file.
output_columns the columns that your query will output.
query the HiveQL query.

This code lives in /examples.
from apiarist.job import HiveJob

class EmailRecipientsSummary(HiveJob):

def table(self):
return 'emails_sent'

def input_columns(self):
return [
('day', 'STRING'),
('weekday', 'INT'),
('sent', 'BIGINT')
]

def output_columns(self):
return [
('year', 'INT'),
('weekday', 'INT'),
('sent', 'BIGINT')
]

def query(self):
return "SELECT YEAR(day), weekday, SUM(sent) FROM emails_sent GROUP BY YEAR(day), weekday;"

if __name__ == "__main__":
EmailRecipientsSummary().run()

Try it out
Locally (must have a Hive server available):
python email_recipients_summary.py -r local /path/to/your/local/file.csv

EMR:
python email_recipients_summary.py -r emr s3://path/to/your/S3/files/

NOTE: for the EMR command, you will need to supply some basic configuration.
Serde
Hive allows custom a serde to be used to define data formats in tables. Apiarist uses csv-serde to handle the CSV format properly.
This serde also allows configuration of the delimiter, quoting character, and escape character. The defaults are, delimiter = ,, quote character = ", escape character = \.
You can override the defaults in your job. You should be careful about escape sequences when doing so because the value needs to be written into a file.
It is best to define them as string literals. Example:
from apiarist.job import HiveJob

class EmailRecipientsSummary(HiveJob):

INFILE_DELIMITER_CHAR = r'\t'
INFILE_QUOTE_CHAR = r"\'"
INFILE_ESCAPE_CHAR = r'%'

OUTFILE_DELIMITER_CHAR = r'\t'
OUTFILE_QUOTE_CHAR = r'\"'
OUTFILE_ESCAPE_CHAR = r"\\"

Configuration
There are a range of options for providing job-specific configuration.
Command-line options
Arguments can be passed to jobs on the command line, or programmatically with an array of options. Argument handling uses the optparse module.
Various options can be passed to control the running of the job. In particular the AWS/EMR options.

-r the run mode. Either local or emr (default is local)
--conf-path use a YAML configuration file.
--output-dir where the results of the job will go.
--label Alternate label for the job. Default is job's class name.
--owner Who is running this job (if different from the current user). Default is getpass.getuser(), or no_user if that fails.
--s3-scratch-uri the bucket in which all the temporary files can go.
--local-scratch-dir this is where temporary file will be written.
--s3-log-uri write the logs to this location on S3.
--ec2-instance-type the base instance type. Default is m3.xlarge
--ec2-master-instance-type if you want the master type to be different.
--num-ec2-instances number of instances (including the master). Default is 2.
--ami-version the ami version. Default is latest.
--hive-version. Default is latest.
--iam-instance-profile role for the EC2 instances on the cluster. Default is EMR_EC2_DefaultRole.
--iam-service-role role for the Amazon EMR service on the cluster. Default is EMR_DefaultRole.
--s3-sync-wait-time to configure how long to wait after uploading files to S3.
--check-emr-status-every configure the interval between each status check on a running job.
--quiet less logging
--verbose more logging
--retain-hive-table for local mode, keep the hive table to run further ad-hoc queries.
--visible-to-all-users make your cluster visible to all IAM users on the same AWS account. Set by default
--no-visible-to-all-users hide your cluster from other IAM users on the same AWS account

NOTE: IAM roles will be mandatory for all users after June 30, 2015. These are set via the --iam-instance-profile and --iam-service-role options above.
See Configure IAM Roles for Amazon EMR
Configuration file
You can supply arguments to your job in a configuration file. It takes the same format as mrjob configuration.
The name of the arguments is different, using underscores instead of hyphens and omitting leading hyphens.
Config options are divided by the type of runner (local/emr) to allow provision of all options for a job in one file.
Below is a sample config file:
runners:
emr:
aws_access_key_id: AABBCCDDEEFF11223344
aws_secret_access_key: AABBCCDDEEFF1122334AABBCCDDEEFF
ec2_instance_type: m3.xlarge
num_ec2_instances: 5
s3_scratch_uri: s3://myjobs/scratchspace/
ami_version: 3.2.1
hive_version: 0.13.1
local:
local_scratch_dir: /home/apiarist/temp/

Arguments supplied on command-line or in application code will override those supplied in the config file.
Environment variables
Some environment variables are used when the value is not provided in other configuration methods.
AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY for connecting to AWS.
S3_SCRATCH_URI a S3 base location where all the temporary file for the job will be written.
APIARIST_TMP_DIR where local files will be written during job runs. (This is overridden by the --local-scratch-dir option)
CSV_SERDE_JAR_S3 a permanent location of the serde jar. If this is not set, Apiarist will automatically upload a copy of the jar to an S3 location in the scratch space.
Passing options to your jobs
Jobs can be configured to accept arguments.
To do this, add the following method to your job class to configutr the options:
def configure_options(self):
super(EmailRecipientsSummary, self).configure_options()
self.add_passthrough_option('--year', dest='year')

And then use the option by providing it in the command line arguments, like this:
python email_recipients_summary.py -r local /path/to/your/local/file.csv --year 2014

Then incorporating it into your HiveQL query like this:
def query(self):
q = "SELECT YEAR(day), weekday, SUM(sent) "
q += "FROM emails_sent "
q += "WHERE YEAR(day) = {0} ".format(self.options.year)
q += "GROUP BY YEAR(day), weekday;"
return q

Querying Hive locally
When developing a new query, you may want to fire up Hive to run it and test your syntax.
To generate the Hive table, run your job locally with the --retain-hive-table argument. After it terminates, run hive from the command line and you will get a Hive prompt.
Because apiarist uses a serde to interpret the text files for Hive, you will need to add this serde to the Hive session before your table can be read.
The command to do this will be something like:
hive> ADD JAR /Users/max/.virtualenvs/apiarist/lib/python2.7/site-packages/apiarist/jars/csv-serde-1.1.2-0.11.0-all.jar;

Obviously, your path will be different, depending on where apiarist is installed.
Once this is done you can start running interactive HiveQL queries on your text data.
License
Apiarist source code is released under Apache 2 License. Check LICENSE file for more information.