biomaj-core 3.0.28

Description:

biomajcore 3.0.28

Biomaj
Biomaj core library
Properties can be overriden by environment variables with pattern BIOMAJ_X_Y_Z for property x.y.z
Example:
use BIOMAJ_LDAP_HOST for ldap.host

3.0.28:
use pytest instead of nose (deprecated)
python3 only support
3.0.27:
add .tgz extension support
3.0.26:
check use_ldap and use_elastic as bool (true/false or 0/1)
3.0.25:
utils/get_folder_size: if file not found, catch error and continue
3.0.24:
get_more_recent_file, return also file info
3.0.23:
PR #9 Add missing ssh defaults for download
3.0.21 [3.0.22 ,tag issue]:
Pin elasticsearch dependency, v7 breaks some API calls
3.0.20:
PR #7 from institut-de-genomique/retry_method, rename default values of retryer.
Rename wait_condition to wait_policy in default values
PR #6 from institut-de-genomique/retry_method, add default values for retryer
Add default values for retryer (see the corresponding branch biomaj-download).
3.0.19:
Add ftps and directftps protocols
#4 Harden hardlinks
copy_files_with_regexp: remove duplicates
Add utils fonctions
Code cleanup
3.0.18:
Allow to use hardlinks in copy_files and copy_files_with_regexp
3.0.17:
Fix --log option
3.0.16:
Add some warnings if some file is missing
3.0.15:
Fix check on bank properties config file when args is empty vs not defined
3.0.14:
Fix checks on local_endpoint_XXX in config.yml
In rabbitmq not defined on config.yml add an empty dict
3.0.13:
Add archive integrity checks
3.0.12:
Add irods support
3.0.11:
Add get_module_version static method, checks module version and latest version on pypi
Allow .args fo process to be empty
3.0.10:
Add env variables WEB_LOCAL_ENDPOINT_XX with XX as a service (defined in utils.py Utils.services) to define an endpoint per service
3.0.9:
#1 Add checks on bank properties
3.0.8:
Add DOCKER_URL, MONGO_URL, MONGO_DB env variable in override
Do not fail on elasticsearch index creation, just log
Add rsync check
3.0.7:
set logging only if necessary
3.0.6:
Fix configparser import for python 2 vs 3
3.0.5:
Add config override with env variables
3.0.4:
Code cleanup
3.0.3:
Put index management in core
3.0.2:
Add missing deps
3.0.1:
Add README etc..
3.0.0:
separation of biomaj and biomaj_core