brainy-mind 0.2.1

Description:

brainymind 0.2.1

<p align=”center”><img src=”https://github.com/pelkmanslab/brainy/raw/master/ui/web/assets/images/brainy_logo.png” alt=”logo” height=”121” width=”121”></p>
##About brainy
brainy is a nimble workflow managing tool, at the core of [iBRAIN](https://github.com/pelkmanslab/iBRAIN/) functionality. It allows creation of projects according to the expected framework layout. It also oversees the execution of the projects and provides monitoring of any relevant progress of the conducted computation.
##iBRAIN
iBRAIN is a software framework for scientific computation primarily applied for BigData extraction and analysis in context of HPC and HTS as well as large bioinformatical analysis.
##Documentation
A really good place to understand what is brainy is to read the user manual:


[User manual](https://github.com/pelkmanslab/brainy/wiki/User-Manual)
[Developer Documentation](https://github.com/pelkmanslab/brainy/wiki/Developer-Documentation)

> Tip: get help about the commands you need by saying brainy help or brainy help project

##Getting started
Create you first project
` brainy create project PureAwesomeness --from demo `
Go inside the project folder and adjust settings in your pipelines. Afterwards run the project.
` cd PureAwesomeness # Adjust settings in .brainy <project settings> and hello.br <pipe description> YAML files brainy run project `
To see the report in your local web browser, do
` brainy ui serve `
If things are looking good, continue by submitting your project into the cloud. Find out how to do this in the [Cloud](https://github.com/pelkmanslab/brainy/wiki/User-Manual#Cloud) section of the brainy’s User Manual.
##Installation
> On Ubuntu (debian): sudo apt-get install python-setuptools git && sudo easy_install pip
> On Mac: brew install libyaml
>It is strongly recommended to use [conda](http://conda.pydata.org/docs/) as python 2.7+ environment.
The package is available on [PyPI](https://pypi.python.org/pypi/brainy-mind/).
` pip install brainy-mind `
To get the bleedding edge version you have to clone the repository and install brainy in developer mode from local folder:
` cd && git clone https://github.com/pelkmanslab/brainy cd brainy && pip install -e . `
Once installed, inspect the state of configuration in ~/.brainy/ folder.
Remember that you can generate ~/.brainy/config from the template again by
` brainy init config `
You will have to edit the template that has been copied according to your cluster scheduler settings and so on.
> Supported OS/platforms are Linux and Mac OSX.
##Tests
To run nose tests navigate into
` cd tests && nosetests -s `