Description:

cwlkernel 0.0.4

Jupyter Notebook Kernel for Common Workflow Language





This is a jupyter notebook kernel which enables running Common Workflow Language. It uses
cwltool as the execution engine. The goal of the kernel is to
improve the human-in-the-loop interaction. The goal of the kernel is to improve human-in-the-loop by improving the
following:

Documenting the workflow
Enable the developer to execute a workflow with multiple steps splited in multiple JN cells
Enable the user to execute multiple workflows stitched together
Ensembl workflows

Run the same workflow many times over different datasets or with different settings over the same data sets
Run different workflows over the same datasets



Currently windows are not supported
Examples
In examples directory there are many examples which illustrate how to use the kernel.

How to contribute
If you are a CWL developer and you would like to contribute feel free to open an issue and ask for new features you
would like to see.

License

For personal and professional use. You cannot resell or redistribute these repositories in their original state.

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