Description:
cwltest 2.5.20240906231108
PyPI:
Conda:
This is a testing tool for checking the output of Tools and Workflows described
with the Common Workflow Language. Among other uses, it is used to run the CWL
conformance tests.
This is written and tested for Python 3.8, 3.9, 3.10, 3.11, 3.12, and 3.13.
Table of Contents
Install
Run on the command line
Generate conformance badges using cwltest
Install
Installing the official package from PyPi
pip install cwltest
Or from bioconda
conda install -c bioconda cwltest
Or from source
git clone https://github.com/common-workflow-language/cwltest.git
cd cwltest && pip install .
Run on the command line
Simple command:
cwltest --test test-descriptions.yml --tool cwl-runner
Generate conformance badges using cwltest
To make badges that show the results of the conformance test,
you can generate JSON files for https://badgen.net by using –badgedir option
To generate JSON files:
cwltest --test test-descriptions.yml --tool cwl-runner --badgedir badges
...
$ cat badges/command_line_tool.json | jq .
{
"subject": "command_line_tool",
"status": "100%",
"color": "green"
}
Once you upload JSON file to a server, you make a badge by using a link like https://badgen.net/https/path/to/generated/json or https://flat.badgen.net/https/path/to/generated/json (for flat badges).
Here is an example of markdown to add a badge:
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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