Description:

gpgraph 0.2.0

GPGraph
Genotype-phenotype maps in NetworkX
Port a GenotypePhenotypeMap to a NetworkX Digraph.
Basic Example
GPGraph follows NetworkX syntax. Initialize a graph, add the
genotype-phenotype map object, and draw the graph. This library even
comes with a draw method, draw_gpgraph, suited for genotype-phenotype graphs.
from gpmap.simulate import MountFujiSimulation
from gpgraph import GenotypePhenotypeGraph
from gpgraph.pyplot import draw_gpgraph, draw_edges

# Simulate a genotype-phenotype map
sim = MountFujiSimulation.from_length(4, roughness_width=1)

# Turn the genotype-phenotype map into a networkx object
G = GenotypePhenotypeGraph(sim)

# Draw the graph
figure = draw_gpgraph(G,
edge_colors = 'gray',
node_size=400)


Install
Clone this repo and install with pip:
pip install -e .

To develop
Clone this repo and run setup.py as follows
python setup.py develop --user

This way, if only python scripts are being changed nothing has
to be reinstalled.

License

For personal and professional use. You cannot resell or redistribute these repositories in their original state.

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