Description:

ope 0.8

ope




Abstracts away running gnu-parallel on tools with FASTA input and provides parsers for some common
formats produced by said tools.
Example usage:
ope parallel -j 4 [query.pep.fa] hmmscan --domtblout [results.tbl] -E 1e-05 -o /dev/null /store/biodb/Pfam-A.hmm /dev/stdin
Hence, the only gnu-parallel flag one needs to worry about is -j for the number of cores to use.
Note that you also need to set the input in the actual tool invocation as /dev/stdin.

Free software: MIT license
Documentation: https://ope.readthedocs.io.


Features

TODO



Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.



History
0.1.0 (2019-12-11)

First release on PyPI.

License

For personal and professional use. You cannot resell or redistribute these repositories in their original state.

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