pema 0.7.0

Description:

pema 0.7.0

PEMA: Peak matching for clustering and classification








PeakMatching
Peak clustering and classification validation using the WFsim
Installation
To install pema, one can easily get the latest version via Pipy. For increased usability one needs some XENONnT credentials, see this page.
pip install pema

Test installation
python -c "import pema ; print(pema.__version__) ; print('great succes')

0.7.0 / 2024-01-15

np.float is deprecated by @dachengx in https://github.com/XENONnT/pema/pull/341
Update RTD configuration by @dachengx in https://github.com/XENONnT/pema/pull/342
Move simulation context to wfsim by @dachengx in https://github.com/XENONnT/pema/pull/344

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.5...v0.7.0
0.6.5 / 2023-09-12

Trying to fix touching_windows bug by @FaroutYLq in https://github.com/XENONnT/pema/pull/333

0.6.4 / 2022-10-18

Add test for event matching customization by @JoranAngevaare in https://github.com/XENONnT/pema/pull/241
Update ax by @JoranAngevaare in https://github.com/XENONnT/pema/pull/259

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.3...v0.6.4
0.6.3 / 2022-06-08

allow kwargs to context by @JoranAngevaare in https://github.com/XENONnT/pema/pull/227
Test notebooks by @JoranAngevaare in https://github.com/XENONnT/pema/pull/228
Add plotting tweak by @JoranAngevaare in https://github.com/XENONnT/pema/pull/233
Bump nbsphinx from 0.8.8 to 0.8.9 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/230
Bump strax from 1.2.2 to 1.2.3 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/231
Bump straxen from 1.7.1 to 1.8.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/232

Full Changelog: https://github.com/XENONnT/pema/compare/v0.6.2...v0.6.3
0.6.0 / 2022-05-30

simplify matching - keep multiple columns and fix + test chunking artefacts by @JoranAngevaare in https://github.com/XENONnT/pema/pull/225

Full Changelog: https://github.com/XENONnT/pema/compare/v0.5.2...v0.6.0
0.5.0 / 2022-05-29

Extend match_acceptance_extended with peak level info by @JoranAngevaare in https://github.com/XENONnT/pema/pull/224

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.4...v0.5.0
0.4.4 / 2022-05-29

Update requirements by @JoranAngevaare in https://github.com/XENONnT/pema/pull/211
Bump typing-extensions from 4.1.1 to 4.2.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/212
Bump straxen from 1.6.1 to 1.6.2 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/214
Bump straxen from 1.6.2 to 1.7.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/216
Test with latest strax by @JoranAngevaare in https://github.com/XENONnT/pema/pull/217
Bump straxen from 1.7.0 to 1.7.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/218
Bump scipy from 1.8.0 to 1.8.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/219
Update dependabot.yml by @JoranAngevaare in https://github.com/XENONnT/pema/pull/221
cmt_version by @JoranAngevaare in https://github.com/XENONnT/pema/pull/222
test with wfsim pre release by @JoranAngevaare in https://github.com/XENONnT/pema/pull/223

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.3...v0.4.4
0.4.3 / 2022-04-12

Bump utilix from 0.6.6 to 0.6.7 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/194
Bump actions/checkout from 2 to 3 by @dependabot in https://github.com/XENONnT/pema/pull/193
Bump xarray from 0.21.1 to 2022.3.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/192
Bump straxen by @JoranAngevaare in https://github.com/XENONnT/pema/pull/195
Bump uproot from 4.2.0 to 4.2.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/197
Bump pytest from 7.0.1 to 7.1.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/198
Bump uproot from 4.2.1 to 4.2.2 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/201
Bump tqdm from 4.63.0 to 4.63.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/203
Bump pytest from 7.1.0 to 7.1.1 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/200
Bump dask from 2022.2.1 to 2022.3.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/199
Bump sphinx from 4.4.0 to 4.5.0 in /extra_requirements by @dependabot in https://github.com/XENONnT/pema/pull/202
remote dependabot by @JoranAngevaare in https://github.com/XENONnT/pema/pull/204
WFSim bump by @JoranAngevaare in https://github.com/XENONnT/pema/pull/208
Fix logger classes in pema by @JoranAngevaare in https://github.com/XENONnT/pema/pull/210

Full Changelog: https://github.com/XENONnT/pema/compare/v0.4.2...v0.4.3
0.4.2 / 2022-03-02

ignore raises on testing (#189)
Test with straxen v1.4.0 (#190)

0.4.1 / 2022-02-16

Fix for new versions (#180)

0.4.0 / 2022-02-11

Field usage updates (#173)
Update docs requirements (#155)
Bump straxen (#167)
Only allow py>3.8 (#165)

Notes:

updates to peak matching based on S2s, lineages changes

0.3.6 / 2021-12-10

Use raw_area_trigger for reconstruction bias (#123)
add gitattributes, fix #132 (#133)
test making docs (#137)
Requirements (many)

0.3.5 / 2021-12-10

Fix bias to #112 (#122)

0.3.4 / 2021-12-10

Fix bias plots (#112)
Bump WFSim (#121)
Pin pymongo (#116)

0.3.3 / 2021-11-08

Add rr matrix (#96, #101)

0.3.2 / 2021-11-08

Several tweaks to v0.3.1 (ec3f2821eab059c812db9fec2e723da6c5cbfc8e, 9d5bae41b91855041dc61717594da70cae5e8292, 437677c301003f4e9812420603390b8b3b93f27b, 437677c301003f4e9812420603390b8b3b93f27b)

0.3.1 / 2021-11-03

use overlap window for matching, include events (#86)

0.3.0 / 2021-10-24

New wfsim inst (#67)
Increase the coverage (#65, #66)
Make compatible with strax(en) -1.0.0rc (#44)

0.2.2 / 2021-08-10

Fix master for strax, straxen, wfsim == 0.16.1, 0.19.3, 0.5.6 (#23)
Fix docs requirements (#34, #32)
Create codeql-analysis.yml (#35)
Fix saving as SVG (#21)
Register from module (#22)
Less pinned requirements (#32)

0.2.1 / 2021-60-17

Allow plot dump to pickle (#20)
minor commits

0.2.0 / 2021-05-21

Increased testing, faster matching (#17)
Update notebooks to be more plug and play (#13)
Use actions for testing (#15)

0.1.0 / 2021-04-10

Restructured code into plugins
Arbitrary acceptance to allow for penalty factors
Install CI:

CodeFactor
Coveralls
Automated documentation
Testing



0.0.1 / 2020-11-25

Further prepare the package and prepare for deployment

0.0.0 / 2020-11-23

Initial commits