plotly-signif 0.0.41

Description:

plotlysignif 0.0.41

plotly-signif
A python class of drawing a Bar/Box plot based on the plotly package, with freely definable statistical annotations
How to use
Download

Use pip

pip install plotly-signif

You can import like this:
from plotly_signif import plotly_signif
# or
from plotly_signif import *


Download the plotly_signif.py to the path of your program

from plotly_signif import *


Enjoy it

Bar
You can refer to the following example :
from plotly_signif import *
import pandas as pd
iris = pd.read_csv('https://raw.githubusercontent.com/mwaskom/seaborn-data/master/iris.csv')
df1 = iris.groupby("species").mean()
df2 = iris.groupby("species").sem()

test = plotly_signif(data=df1,error=df2,text={"x":"X","y":"Y"})
test.plot()
# 添加统计注释
annotation_list = [[0,1,1],[2,0,3,-1],[2,1,2,2],[0,1,3,6],[0,2,3,9]]
test.add_annotations(annotation_list = annotation_list,text="***",inne_color="#B799FF")
test.add_annotations(annotation_list = [[1,2,3,3]],text="🏅",sign_d_index=2)
test.add_annotations(annotation_list = [[1,1,2,4]],text="😭",sign_d_index=2)
test.add_annotations(annotation_list = [[1,0,2,2]],text="⭐⭐⭐",sign_d_index=2,size=12)
test.add_annotations(annotation_list = [[1,2,0]],text="ns",size=14,sign_d_index=2.5)
# 绘制/保存
test.show("./image/example.png") # 保存使用属性 save_path = "./image/example.png"


test2 = plotly_signif(data=df1,error=df2,text={"x":"X","y":"Y"})
test2.set_color(["#453C67","#6D67E4",'#B799FF','#ACBCFF']) # change the colors
test2.plot(pic_px=[580,650])
# An example of changing labels based on plotly syntax
test2.fig.update_layout(
title = dict( # set the title
text = "Test 2",
font = {'size': 20},
x = 0.5,
y = 0.9,
),
)
test2.fig.update_layout( # set the side labels
legend=dict(
orientation="h",
x=0.12,
y=-0.15,
traceorder="normal",
font=dict(size=16),
),
)
test2.add_annotations(annotation_list = [[0,1,3,6]],text="🧠",sign_d_index=2)
test2.add_annotations(annotation_list = [[0,0,3,3]],text="❓",sign_d_index=2)
test2.add_annotations(annotation_list = [[1,0,0,2.3]],text="👽",sign_d_index=2,inne_color="#FFFFFF")
test2.add_annotations(annotation_list = [[1,2,2,5]],text="🤖",sign_d_index=2,inne_color="#FFFFFF")
test2.add_annotations(annotation_list = [[1,1,1,7.6]],text="🐵",sign_d_index=2,inne_color="#FFFFFF")
test2.add_annotations(annotation_list = [[1,3,3,10]],text="🐁",sign_d_index=2,inne_color="#FFFFFF")
test2.show()


Box
data = pd.read_csv('https://raw.githubusercontent.com/mwaskom/seaborn-data/master/fmri.csv')


subject timepoint event region signal
0 s13 18 stim parietal -0.017552
1 s5 14 stim parietal -0.080883
2 s12 18 stim parietal -0.081033
3 s11 18 stim parietal -0.046134
4 s10 18 stim parietal -0.037970
... ... ... ... ... ...
1059 s0 8 cue frontal 0.018165
1060 s13 7 cue frontal -0.029130
1061 s12 7 cue frontal -0.004939
1062 s11 7 cue frontal -0.025367
1063 s0 0 cue parietal -0.006899

Box_test = plotly_signif(data=data,text={"x":"Region","y":"Signal"},mode="Box")
Box_test.plot(pic_px=[840,620],Box_list=["subject","region","signal"])
annotation_list = [[0,1,0],[0,0,2,1],[0,2,5,4],[1,3,4,5]]
Box_test.add_annotations(annotation_list=annotation_list)
Box_test.fig.update_layout(title_text="Seaborn-data-fmri groupby subject")
Box_test.show()


Parameter explanation
🌀 You can use plotly's syntax to set the object.fig , new settings will overwrite the default settings.

__init__ :

data : Data frame used for drawing bar chart
error : Data frame corresponding to error bars, only used with mode = "Bar"
text : Image text label
mode : default = "Bar" , and supports "Box" to plot


plot()

pic_px : image size list , [width,height] , The unit is px
Box_list : If a box plot is drawn, the meaning of this list is ["which Group","which x","which y"]


add_annotations()


annotation_list : A two-dimensional list representing the position of the annotation, with each sublist representing an annotation. The length of 3 is the inter-group annotation, the length of 4 is the intra-group annotation, and the last value controls the y-axis position.
[0,1,1] means that the annotation is between the 1/2th group, and the y-axis position drops 1 level relative to y_max; [2,0,3,-1] means that the annotation is within the 3rd group, and within the group In the 1/4th column, the y-axis position rises one level relative to y_max.

表示注释在什么位置的二维列表，每一个子列表表示一个注释。长度为3的是组间注释，长度4为组内注释，最后一个值控制y轴位置。
[0,1,1] 表示注释在第1/2个组之间，y轴位置相对于 y_max 下降1层；[2,0,3,-1] 表示注释在第3个组内，组内的第1/4个柱间，y轴位置相对于 y_max 上升一层。



text : annotation symbol, default = "***" , which can also be 🪙🆙🏅⭐🔥🍋💔😃😭 ... symbols, visible https://www.emojiall.com/zh-hans/copy


size : symbol font size, default = 16


line_width : line width, default = 1.5


color : intergroup annotation color, default = 'rgba(0,0,0,1)'


inne_color : annotation color within group, default = "rgba(100,100,100,1)"


y_max_index : The y-height of the annotation when layer is set to 0, default = 1.15 , multiply the height of the tallest bar in the chart by y_max_index to get y_max


layer_down_index : control the spacing between upper and lower layers, default = 0.08 , layer_down = layer_down_index × y_max


sign_d_index : distance between line and symbol, default = 4 , layer_down / sign_d_index


line_d_index : the length of the hanging line, default = 3.2 , layer_down / line_d_index



show()

save_path : path to save.


set_color() : set the color of the column, given a list
set_color() need before use plot()

TODO

Supports boxplots
Supports horizontal drawing

requirement

numpy
pandas
plotly
kaleido (There may be problems with the installation of this package)

Any feedback on bugs or suggestions for features are welcome