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Description:

pypackman 1.4.13

PACKMAN: PACKing and Motion ANalysis

This package focuses on studying molecular structures and their dynamics using a simple yet informative property known as Protein Packing. Over the last few years, we have worked on several techniques to capture and quantify the protein packing, resulting in a few publications. This package has all the code to repeat and further develop these techniques.
DOCUMENTATION

IMPORTANT : Documentation, Tutorials & More

INSTALLATION

Installing with pip (Recommended)

pip install py-packman

Installing from source

git clone https://github.com/Pranavkhade/PACKMAN
cd PACKMAN
python setup.py install

HOW TO USE
PACKMAN, along with its components, can be accessed via Graphical User Interface (GUI), Command-line Interface (CLI), and Application programming interface (API).
For the GUI, please run the following command.
python -m packman gui

OR
python3 -m packman gui

For the CLI and API, please read the tutorials & documentation.
REPORTING ISSUES
Click here to report issues with any aspect of the package. Please search for the resolved issues first.
WEB SERVERS

Hinge Prediction Web Server
hd-ANM Web Server
Packing Entropy Web Server
DCI web server

RELATED RESEARCH ARTICLES

PACKMAN-molecule
Hinge Prediction
Compliance
hd-ANM
Packing Entropy
DCI

ACKNOWLEDGEMENTS
The development of the PACKMAN package webservers are supported by NSF grant DBI 1661391. The authors also thank ResearchIT@Iowa State University for helping with many aspects of computing.