Description:
pyabf 2.3.8
pyABF: a pure-Python ABF file reader
pyABF provides a Python interface to electrophysiology files in the Axon Binary Format (ABF).
pyABF supports Python 3 and does not use obscure libraries (just numpy and matplotlib).
pyABF supports reading ABF1 and ABF2 files and can write ABF1 files.
Quickstart
Install or upgrade pyABF:
pip install --upgrade pyabf
Access ABF sweep data:
import pyabf
abf = pyabf.ABF("demo.abf")
abf.setSweep(sweepNumber=3, channel=0)
print(abf.sweepY) # displays sweep data (ADC)
print(abf.sweepX) # displays sweep times (seconds)
print(abf.sweepC) # displays command waveform (DAC)
Plot a sweep with Matplotlib:
import pyabf
import matplotlib.pyplot as plt
abf = pyabf.ABF("demo.abf")
abf.setSweep(14)
plt.plot(abf.sweepX, abf.sweepY)
plt.show()
Additional Examples
Full pyabf API documentation, additional code examples, a pyabf cookbook,
and low-level information about the ABF file format can be found at the pyABF
project homepage: http://swharden.com/pyabf/
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
Customer Reviews
There are no reviews.
