pybiology 0.0.2
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Description:
pybiology 0.0.2
pybbiology
Freely available tools for Analsis of DNA
The Biopython Project is an international association of developers
of freely available Python tools for computational molecular biology.
List of functions and usage
seq_percent(dna_sequence,*char)
has_stop_codon(dna,frame=0)
1. compute DNA sequence
def seq_percent(dna_sequence,*char):
sum=0
listed=[]
dna_length=len(dna_sequence)
for arg in char:
if listed.count(arg)==0:
sum= sum + dna_sequence.count(arg)
listed.append(arg)
return (sum)*100.0/dna_length
2. This function checks if given DNA has in frame stop codons.
def has_stop_codon(dna,frame=0):
stop_codon_found=False
stop_codons=['tga','tag','taa']
for i in range(frame,len(dna),3):
codon=dna[i:i+3].lower()
if codon in stop_codons:
stop_codon_found=True
break
return stop_codon_found
License:
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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