Description:
pymmcoreMDAwriters 0.5.0
pymmcore-MDA-writers
This package provides writers for pymmcore-plus. At the time of writing pymmc+ provides hooks for saving images but does not implement
any mechanism for saving image (check in https://github.com/tlambert03/pymmcore-plus/pull/29 for updates). Currently provided are:
A simple multifile tiff writer - can be loaded with tifffile
A simple zarr writer - not ome-zarr
pip install pymmcore-mda-writers
(This will require a minimum of pymmcore-plus>=0.4.0 which has not yet been released. You can install a working version with pip install git+https://github.com/tlambert03/pymmcore-plus)
All you need to add to your script is:
# tiff writer
writer = SimpleMultiFileTiffWriter("data/tiff_writer_example/run")
# zarr writer
writer = ZarrWriter("data/zarr_writer_example/run", img_shape=(512, 512), dtype=np.uint16)
for a complete example see the examples folder.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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