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pysamcabbage 0.15.3
pysam - a python module for reading, manipulating and writing
genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides
facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
files as well as access to the command line functionality of the
samtools and bcftools packages. The module supports compression and
random access through indexing.
This module provides a low-level wrapper around the htslib C-API as
using cython and a high-level API for convenient access to the data
within standard genomic file formats.
See:
http://www.htslib.org
https://github.com/pysam-developers/pysam
http://pysam.readthedocs.org/en/stable
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