pysoar 1.0.2
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Description:
pysoar 1.0.2
PySOAR
PySOAR is a Python (3.9+) package for data analysis of translocation events during nanopore sensing. The main features include:
Baseline correction function.
Splitting the current into bins and doing a Poisson fit on that data to help the user visually decide on what threshold should be used for this data.
Finding peaks function based on the threshold chosen.
Ability to extract features from the events using both CUSUM and ADEPT methods.
Histogram plots of peak curretn and dwell time data.
Installation
To install with pip:
'''
pip install --user pysoar
'''
PySOAR utilises the following external libraries:
NumPy
SciPy
ruptures
matplotlib
Acknowledgements
Developed by Vladimir Ivanov as part of the MSci final year project while working with the Edel's group at Imperial College London
License:
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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