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Description:
refchooser 0.2.1
Tools to help choose a reference from a list of assemblies.
The refchooser project was developed by the United States Food
and Drug Administration, Center for Food Safety and Applied Nutrition.
Free software
Documentation: https://refchooser.readthedocs.io
Source Code: https://github.com/CFSAN-Biostatistics/refchooser
PyPI Distribution: https://pypi.python.org/pypi/refchooser
Features
Print a table of metrics to help choose an assembly from a collection.
N50
N90
Number of contigs
Assembly length
Mean mash distance to all other assemblies
Citing refchooser
To cite refchooser, please reference the refchooser GitHub repository:
https://github.com/CFSAN-Biostatistics/refchooser
License
See the LICENSE file included in the refchooser distribution.
History
0.2.1 (2019-08-20)
Detect and exclude empty assemblies.
0.2.0 (2019-07-12)
Add N50 and N90 metrics.
Calculate a simple “Score” for each assembly, the N50/Distance ratio.
Combine all metrics in a single table sortable by any column.
0.1.0 (2019-06-21)
Initial version.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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