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Description:
seuratToAdata 0.0.6
Convert Seurat Obj (rds) to Scanpy obj (adata)
Usage:
conda enve create -f env.yaml
conda activate seuratToAdata
usage: seuratToAdata [-h] -o OUTPUT [--RNA] rds
positional arguments:
rds Use - for STDIN or path for seurat obj(*.rds file)
optional arguments:
-h, --help show this help message and exit
-o OUTPUT, --output OUTPUT
Specify path to write the results (default: None)
--RNA Whether is store in the RNA slot (default: False)
Issues might arise:
UnicodeDecodeError: 'ascii' codec can't decode byte 0xcf in position 1: ordinal not in range(128).
Solved by fixing the locale: https://stackoverflow.com/questions/51026315/how-to-solve-unicodedecodeerror-in-python-3-6/51027262#51027262
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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