Description:

seuratToAdata 0.0.6

Convert Seurat Obj (rds) to Scanpy obj (adata)
Usage:
conda enve create -f env.yaml
conda activate seuratToAdata

usage: seuratToAdata [-h] -o OUTPUT [--RNA] rds

positional arguments:
rds Use - for STDIN or path for seurat obj(*.rds file)

optional arguments:
-h, --help show this help message and exit
-o OUTPUT, --output OUTPUT
Specify path to write the results (default: None)
--RNA Whether is store in the RNA slot (default: False)

Issues might arise:


UnicodeDecodeError: 'ascii' codec can't decode byte 0xcf in position 1: ordinal not in range(128).
Solved by fixing the locale: https://stackoverflow.com/questions/51026315/how-to-solve-unicodedecodeerror-in-python-3-6/51027262#51027262

License

For personal and professional use. You cannot resell or redistribute these repositories in their original state.

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