Description:

treefit 1.0.0

Treefit for Python - The first software for quantitative trajectory inference
This is an implementation of
Treefit in Python.
Treefit is a novel data analysis toolkit that helps you perform
two types of analysis: 1) checking the goodness-of-fit of tree models
to your single-cell gene expression data; and 2) deciding which tree
best fits your data.
Install
pip install treefit

Usage
The main functions are treefit.treefit() and treefit.plot():
fit = treefit.treefit(YOUR_SINGLE_CELL_GENE_EXPRESSION_DATA)
treefit.plot(fit)

See https://hayamizu-lab.github.io/treefit-python/ for details.

License

For personal and professional use. You cannot resell or redistribute these repositories in their original state.

Share

• Share on Facebook
• Share on Twitter