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Description:
xfcs 1.1.6
Extract metadata and data from FCS (3.0, 3.1) files.
Data extraction supports file formats:
Mode: List (L)
Datatypes: I, F, D
Implemented parameter data set options:
raw
channel values
scale values (log10, gain)
channel and scale combined into one data set
fluorescence compensation
log10 scaled fluorescence compensation
Metadata extraction features:
support for non-compliant files
merge or separate csv files
rolling mean for any keyword with a numeric value
append new fcs files to previously generated metadata csv file
Interactive dashboard plots using the xfcsdashboard add-on module.
Installation
Using pip:
pip install xfcs
Without pip:
python setup.py install
Command Line Usage
See
USAGE
for expanded details.
To see a list of available commands and arguments, run ‘’xfcs data –help’’ or ‘’xfcs metadata –help’’
extract data: xfcs data [options]
extract metadata: xfcs metadata [options]
Requirements
Python 3.5 or greater
numpy
pandas
License
xfcs is released under the BSD 2-clause license. See
LICENSE
for details.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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