batemaneq 0.2.2

Description:

batemaneq 0.2.2

batemaneq





batemaneq provides a C++ implementation of the Bateman equation,
and a Python bidning thereof.

Documentation
Autogenerated API documentation is found here: http://hera.physchem.kth.se/~batemaneq/branches/master/html


Installation
Simplest way to install batemaneq and is to use pip (requires a C++11 compliant compiler to be installed for the C++ version):
$ pip install batemaneq
or using the conda package manager:
$ conda install -c bjodah batemaneq pytest
$ python -m pytest --pyargs batemaneq


Examples
See examples/, and rendered jupyter notebooks here:
http://hera.physchem.kth.se/~batemaneq/branches/master/examples

The Thorium series
Half-lives shorter than 1h excluded from the decay chain:
In Python:
>>> from batemaneq import bateman_parent
>>> from math import log as ln
>>> d = 1./365 # Th-232 Ra-228 Ac-228 Th-228
>>> h = d/24 # Ra-224 Pb-212 Bi-212 (Pb-208)
>>> Thalf = [1.405e10, 5.75, 6.25*h, 1.9116, 3.6319*d, 10.64*h, 60.55/60*h]
>>> bateman_parent([ln(2)/x for x in Thalf], 100) # 100 years
[0.9999999950665681, 4.0925028658312447e-10, 5.078051001187696e-14, 1.3605575316895603e-10, 7.082081172329036e-13, 8.64484883194704e-14, 8.199335787638167e-15]
In C++:
#include <cmath>
#include <iostream>
#include <iomanip>
#include <vector>
#include "bateman.hpp"

using vec_t = std::vector<double>;
double exp_cb(double arg){
return std::exp(arg);
}

int main(){
double one = 1;
double d = one/365;
double h = d/24;
double ln2 = std::log(2);
vec_t lmbd {{ ln2/1.405e10, ln2/5.75, ln2/(6.25*h),
ln2/1.9116, ln2/(3.6319*d), ln2/(10.64*h), ln2/(60.55/60*h) }};
auto p = bateman::bateman_parent(lmbd, 100.0, exp_cb);
std::cout << std::setprecision(17); // all significant digits
for (auto v : p)
std::cout << v << " ";
std::cout << std::endl;
return 0;
}
$ g++ -std=c++11 double.cpp -I../include
$ ./a.out
0.99999999506656811 4.0925028658312447e-10 5.0780510011876959e-14 1.3605575316895603e-10 7.0820811723290359e-13 8.6448488319470398e-14 8.1993357876381666e-15
In C++ using boost::multiprecision::cpp_dec_float_50:
#include <cmath>
#include <iostream>
#include <vector>
#include <boost/multiprecision/cpp_dec_float.hpp>
#include "bateman.hpp"

using Real_t = boost::multiprecision::cpp_dec_float_50;
using vec_t = std::vector<Real_t>;
Real_t exp_cb(Real_t arg){
return boost::multiprecision::exp(arg);
}

int main(){
Real_t one = 1;
Real_t d = one/365;
Real_t h = d/24;
Real_t ln2 = boost::multiprecision::log(2*one);
vec_t lmbd {{ ln2/1.405e10, ln2/5.75, ln2/(6.25*h),
ln2/1.9116, ln2/(3.6319*d), ln2/(10.64*h), ln2/(60.55/60*h) }};
auto p = bateman::bateman_parent(lmbd, static_cast<Real_t>(100), exp_cb);
std::cout << std::setprecision(30); // show 30 of our 50 digits
for (auto v : p)
std::cout << v << " ";
std::cout << std::endl;
return 0;
}
$ g++ -std=c++11 multi.cpp -I../include
$ ./a.out
0.999999995066568122063002778128 4.09250286583124398565537707859e-10 5.07805100118769662240802082504e-14 1.3605575316895606205575997585e-10 7.08208117232903695657287769184e-13 8.6448488319470425326824303941e-14 8.19933578763816849146541981927e-15
We see that the concentration of the final nuclide only varies in the 15th decimal place (we had no catastropic cancelation in this example).




License
The source code is Open Source and is released under the very permissive
“simplified (2-clause) BSD license”. See LICENSE.txt for further details.
Contributors are welcome to suggest improvements at https://github.com/bjodah/batemaneq


Author
Björn I. Dahlgren, contact:

gmail address: bjodah