bel-repository 0.1.2
Last updated:
0 purchases
Description:
belrepository 0.1.2
A utility for loading data from repositories of BEL documents with PyBEL [1].
Installation
bel_repository can be installed from PyPI with the following command:
$ pip install bel-repository
The latest version can be installed from GitHub with:
$ pip install git+https://github.com/pybel/bel-repository.git
Usage
from typing import Mapping
from bel_repository import BELRepository
from pybel import BELGraph
# Build a repository by giving a folder
bel_repository = BELRepository('/path/to/folder/with/bel/')
# Get a mapping from paths to graphs
graphs: Mapping[str, BELGraph] = bel_repository.get_graphs()
# Get a combine graph
graph: BELGraph = bel_repository.get_graph()
Example BEL Repositories
Each of these repositories has BEL content that can be pip installed:
https://github.com/cthoyt/selventa-knowledge/
https://github.com/pharmacome/conib
https://github.com/hemekg/hemekg
https://github.com/covid19kg/covid19kg
https://github.com/neurommsig-epilepsy/neurommsig-epilepsy
More publicly available BEL content can be found in the listing in
this blog post.
References
[1]
Hoyt, C. T., et al. (2017). PyBEL: a computational framework for Biological Expression
Language. Bioinformatics (Oxford, England), 34(4), 703–704.
License:
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
Customer Reviews
There are no reviews.
