birdhouse-finch 0.12.1

Description:

birdhousefinch 0.12.1

Finch


Finch (the bird)
Finch is a bird that can adapt to many different climates and ecological niches


A Web Processing Service for Climate Indicators.

Documentation
Learn more about Finch in its official documentation at: https://pavics-sdi.readthedocs.io/projects/finch
Submit bug reports, questions and feature requests at: https://github.com/bird-house/finch/issues


Contributing
You can find information about contributing in our Developer Guide.
Please use bump-my-version to release a new version.


License

Free software: Apache Software License 2.0



Credits
This package was created with Cookiecutter and the bird-house/cookiecutter-birdhouse project template.

Changes




0.12.1 (2024-06-25)

Replaced unidecode with anyascii due to a licensing issue.
Synchronized some dependencies across build systems.
Added a workaround in wps_geoseries_to_netcdf to handle a pandas v2.0 behaviour change.



0.12.0 (2024-03-25)

Renamed the installed package from finch to birdhouse-finch.
First release of the birdhouse-finch package on PyPI.
Versioning now adheres to SemVer v2.0.0.
Added a Makefile recipe to the repository to evaluate notebooks while ignoring the output cells.
Cleaned up documentation to facilitate easier navigation.
Slightly reorganized the documentation for easier navigation.
Fast-forwarded the cookiecutter.
Fixed the Manifest.in to add all necessary files to wheel.
Removed references to files that have never existed (apidoc).
Cleaned up the setup code.
Added more files to be ignored in the .gitignore and in the Manifest.in.



0.11.4 (2023-12-20)

Fixed a bug that occurred when fixing a broken cftime-index with newer cftime versions.
Placed pins on xarray and pandas to prevent future errors from changes to frequency codes.



0.11.3 (2023-08-23)

Updated ReadTheDocs to use the new mambaforge version (2022.9).
Addressed calls in GitHub Action usage that were emitting warnings.
Updated MANIFEST.in to include and exclude the relevant files for the source distribution.
Modified the setup.py to only include the files necessary in the wheel.
Updated AUTHORS.rst to list more contributors.
Removed namespace file (__init__.py) from tests to ensure that they aren’t treated like an importable package.
Updated pre-commit hooks.
Sorted software requirements for legibility.
Removed Travis-CI shell script.



0.11.2 (2023-07-27)

Added a Docker-based testing suite to the GitHub Workflows.
Added a wider range of Python versions to test against in the GitHub Workflows.
Migrated conda-build action from mamba-org/provision-with-micromamba to mamba-org/setup-micromamba.
Cleaned up the Dockerfile. Docker now pip-installs finch directly from the GitHub repository.
Finch now explicitly supports Python3.11.
Pinned Python below 3.12 on conda and removed pin on pint for ReadTheDocs builds.
Added a GitHub Workflow to bump the version number and to create tags from the version bumping process on dispatch.
Added a pre-commit hook for validating the ReadTheDocs configuration and GitHub Workflows.



0.11.1 (2023-06-19)

Update to xclim 0.43.0.

Added xclim yml module support:

Added humidex days above calculation via yml module.
Reimplmented streamflow indicators via yml module (adjust for xclim 0.41 breaking changes).




Fixed bug for CanDCS-U6 ensemble “26models” list.
Passing an empty string to ensemble_percentiles in ensemble processes will return the merged un-reduced ensemble. The different members are listed along the realization coordinates through raw names allowing for basic distinction between the input members.



0.11.0 (2023-06-13)

Fixed iter_local when depth > 0 to avoid all files to be considered twice
Revised documentation configuration on ReadTheDocs to leverage Anaconda (Mambaforge)
Minor adjustments to dependency configurations
Removed configuration elements handling from finch start. One can still pass custom config files, but all configuration defaults are handled by finch/default.cfg and the WSGI function. jinja2 is not a dependency anymore.



0.10.0 (2022-11-04)


Generalize ensemble datasets configuration.

Datasets usable by ensemble processes are now specified through a YAML file which is pointed to in the configuration.
As a consequence processes are generated according to the available variables. Similarly for the allowed values of some inputs on these processes.
The output name now includes the dataset name (if a custom name was not specified).
finch.processes.xclim was removed, there is no static module of processes.
Input “rcp” has been renamed to “scenario”.
Input “dataset_name” has been fixed and renamed to “dataset”.




Update to xclim 0.38.0.
Improved subset_grid_point_dataset & subset_bbox_dataset performance when using local files.



0.9.2 (2022-07-19)

Fix Finch unable to startup in the Docker image.



0.9.1 (2022-07-07)

Avoid using a broken version of libarchive in the Docker image.



0.9.0 (2022-07-06)

Fix use of output_name, add output_format to xclim indicators.
Change all outputs to use output as the main output field name (instead of output_netcdf).
Updated to xclim 0.37:


Percentile inputs of xclim indicators have been renamed with generic names, excluding an explicit mention to the target percentile.
In ensemble processes, these percentiles can now be chosen through perc_[var] inputs. The default values are inherited from earlier versions of xclim.



Average shape process downgraded to be single-threaded, as ESMF seems to have issues with multithreading.
Removed deprecated processes subset_ensemble_bbox_BCCAQv2, subset_ensemble_BCCAQv2 and BCCAQv2_heat_wave_frequency_gridpoint.
Added csv_precision to all processes allowing CSV output. When given, it controls the number of decimal places in the output.



0.8.3 (2022-04-21)

Preserve RCP dimension in ensemble processes, even when only RCP is selected.
Pin dask and distributed at 2022.1.0, see https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/issues/100



0.8.2 (2022-02-07)

Add geoseries_to_netcdf process, converting a geojson (like a OGC-API request) to a CF-compliant netCDF.
Add output_name argument to most processes (excepted subsetting and averaging processes), to control the name (or prefix) of the output file.
New dependency python-slugify to ensure filenames are safe and valid.
Pinning dask to <=2022.1.0 to avoid a performance issue with 2022.1.1.



0.8.0 (2022-01-13)

Add hourly_to_daily process, converting hourly data to daily data using a reduction operation (sum, mean, max, min).
Upgrade to clisops 0.8.0 to accelerate spatial averages over regions.
Upgrade to xesmf 0.6.2 to fix spatial averaging bug not weighing correctly cells with varing areas.
Update to PyWPS 4.5.1 to allow the creation of recursive directories for outputs.


Notes

Upgrading to birdy 0.8.1 will remove annoying warnings when accessing netCDF files from THREDDS.




0.7.7 (2021-11-16)

Fix Sentry SDK initialization error



0.7.6 (2021-11-16)

Update to xclim 0.31
Added SENTRY_ENV configuration
Possibility to pass multiple “rcp” inputs for ensemble processes.
Writing to netcdf is done only after calling load() to avoid locks occurring within dask calls to to_netcdf in multi-processing mode.
Add an average parameter to ensemble processes. When true, a spatial average is returned.



0.7.5 (2021-09-07)

Update to xclim 0.27
Added empirical_quantile_mapping process calling xclim.sdba.EmpiricalQuantileMapping.
Update to PyWPS 4.4.5



0.7.4 (2021-05-04)

Update to xclim 0.26.
Default metadata attributes are given through configuration, instead of being hardcoded.
Inclusion of a list of input dataset urls in ensemble processes.
Correct ensemble statistics on day-of-year indicators.



0.7.3 (2021-04-13)

Workaround for clisops shutting down logging
More flexible chunking
New subsetting & averaging notebook
Require xESMF>=0.5.3



0.7.2 (2021-04-01)

Add data_validation and cf_compliance arguments for ensemble xclim processes.



0.7.1 (2021-03-25)

Add data_validation and cf_compliance arguments for xclim processes.
Skip data_validation checks for the BCCAQv2HeatWave process.



0.7.0 (2021-03-15)

Add new process averaging gridded fields over a polygon using xESMF
Update to xclim 0.24, allowing for considerable simplification of the indicator process building mechanism
Update to PyWPS 4.4



0.6.1 (2021-01-26)

Add partial support for xclim 0.23 with new indicators
Add support for land indicators
Add support for multivariate indicators
Upgrade PyWPS to 4.2.10
Fix bug in variable name inference
Add support for non-standard variable name (univariate case only)



0.6.0 (2021-01-12)

fix to chunk regions of subsetted files
use cruft to propagate changes from the birdhouse cookiecutter
catch documentation build error earlier since doc build is part of regular CI build
catch tutorial notebooks out of sync with code earlier since also part of regular CI build
use mock imports to facilitate building docs
add partial support for xclim v0.21
add support for shapefiles in subset_shape



0.5.2 (2020-03-25)

fix to remove realization coordinate from ensembles
added chunk datasets for local files also
update xclim to == 0.15.2



0.5.1 (2020-03-18)

fix local bccaqv2 files filtering



0.5.0 (2020-03-18)

update xclim to 0.15.0
add french translation of processes abstract and descriptions



0.4.1 (2020-03-12)

fix #103 (drs_filename) add defaults when project_id is unknown
drs_filenames: use dash instead of underscores in variable names
fix #80 frequency attrs of computed datasets



0.4.0 (2020-03-10)

Add ensembles processes
Allow ensemble process to specify which models are included
Accept multiple files for processing
Update from latest cookie-cutter template
Add grid point indicator processes
Add ensemble bbox processes
Add support for percentiles inputs
Update xclim to 0.14
Pin PyWPS to 4.2.4
Add DODS to supported formats for resources



0.3.x (2020-01-17)

Extract common inputs and outputs to wpsio.py
Speed up CSV creation
Explicitly close thread pool
Tests for CSV conversion
Added subset_shape process
Pin PyWPS to ~4.2.3
Add start and end date to bccaqv2 subset
Identifier DAP link by header
Datetime fix when replacing hour to 12
deprecate lon0 and lat0 for SubsetGridPointBCCAQV2Process
change point subset processes to accept a comma separated list of floats for multiple grid cells



0.2.7 (2019-12-09)

Fix for segmentation fault in libnetcdf (pin version to 4.6.2 until a fix is released)



0.2.6 (2019-12-04)

Notebooks are tested by Travis-CI
Bug fix
Update xclim to >= 0.12.2
Update pywps to > 4.2.3



0.2.5 (2019-10-03)

Add test for DAP input to subsetting
Update notebook to run on the Jenkins test suite



0.2.3 (2019-05-27)

Allow creating CSV output
Keep global attributes when computing indices
Add BCCAQV2HeatWave process
Add basic usage notebook



0.2.1 (2019-05-06)

Require Python>=3.6
Fix percentages in status update
Improve loggin



0.2 (2019-05-02)

Added subset_gridpoint process
Support DAP links
Added bounding box subsetting
Threshold arguments passed as strings with units
Added test for heat_wave_frequency
Use sentry to monitor error messages
Include Dockerfile
Use processes instead of threads



0.1 (2018-11-15)

First release.