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Description:
pymotifcounter 1.0.1
A unified Python interface to fast motif enumeration algorithms such as:
mfinder
fanmod
NetMODE
PGD
A typical usage example is as follows:
"""
Visualise the distribution of size-3 motifs.
"""
from pymotifcounter.concretecounters import PyMotifCounterMfinder
from matplotlib import pyplot as plt
from networkx import watts_strogatz_graph
if __name__ == "__main__":
# Create an example network
g = watts_strogatz_graph(100, 8, 0.2)
# Create a motif counter based on mfinder
motif_counter = PyMotifCounterMfinder()
# Enumerate motifs using the selected counter
g_mtf_count = motif_counter(g)
# Visualise the distribution
g_mtf_count.plot.bar("motif_id", "nreal")
plt.tight_layout()
plt.show()
Which would produce the following distribution:
Installation
Latest release can be installed from pypi by > pip install pymotifcounter.
Latest development version can be obtained by cloning this repository
For more details please see the project’s documentation on readthedocs
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
Files:
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