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Description:
snacli 1.2
SnaCLI
SnaCLI is a library which simplifies writing scripts which can be both run
directly from the command line (based on docopt), as well as be called in a
Snakemake file.
Introduction
In the Snakemake workflow management system, tasks can call Python scripts
and pass them input, output and log filenames as well as global configuration
values and non-filename parameters.
The system for passing and accessing these arguments is different to that
adopted by command line tools (for example using the docopt library).
SnaCLI allows to easily combine the two approaches (docopt and snakemake) for
providing arguments to a script. Script based on SnaCLI can be invoked both from
the command line and from snakemake. Inside the script, the
same code can be used in both cases, without modifications.
Usage
The usage of the library is explained in the
user manual.
License
For personal and professional use. You cannot resell or redistribute these repositories in their original state.
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